Zilla spinosa plant part extracts exhibited significantly different inhibitory effect on the seed germination and seedling growth of its associate species. Shoot extract reduced the percentage germination and seedling length of different test species more than root extract. Except of Z. coccineum, seedling growth was more sensitive than seed germination. Shoot/root ratio of all test species increased significantly with increase in extract concentration. Mycelia growth of the two rhizosphere fungal species was more significantly reduced by Z. spinosa shoot extract than root extract. The effects of the different extracts on total protein and total carbohydrate contents of the two test species were comparable. Non-significant increase was recorded at low concentration of both shoot and root extract. However, with the rise of extract concentration, highly significant reduction in the content of these metabolites was recorded.