Background: External genital anomalies are among the most common congenital anomalies. Proper early diagnosis  and  management  of  genital  anomalies  are  of great  importance to  minimize  medical, psychological and social complications. Aim: 1 )explore the pattern of genital anomalies in male infants (age from the first day of birth up to two years) presented to primary health care offices  in Sohag Governorate for routine vaccination, 2)determine potential environmental and parental risk factors which could be related to detected anomalies and 3) follow up male infants with cryptorchidism up the age of two years  for spontaneous descent of the testis.  Patients and methods: our study included

1134 male infants who presented to primary health care offices in Sohag for routine vaccination during

the period from June 2008 to March 2009. This study was conducted in Sohag city and two villages around it and also included two towns as representative of suburban area in addition to a village from each town. Male infants were examined to detect visible genital anomalies and testes were palpated along their normal anatomical  pathway of descent and cases of cryptorchidism   followed at three months interval up to two years to detect spontaneous descent of the testis .A clinical data sheet was filled  for all  male  participants  including  demographic  data,  parental  data  and  results  of clinical examination.  Results :There were   129(11.3%)   cases  with genital anomalies among the screened

1134   male infants , Various  abnormalities  in the form of  ,hydrocele  ,   cryptorchidism,  hypospadias, indirect inguinal hernia,  phimosis and  epispadias   were diagnosed.  No spontaneous descent of the testis was detected in cases with cryptorchdism during the follow up period.  Family history of genital anomalies,  residency  in  rural area,  multiparity and cesarean section were detected as risk factor associated  with  genital  anomalies  .Conclusion:  This  study  in  Sohag  Governorate,  Upper Egypt

showed a relatively high prevalence of genital anomalies.  Therefore we recommended more studies including larger population sizes to detect the actual data about genital anomalies and associated risk factors.  Increasing  clinical  education  of physicians  about  this  problem,  as  well  as  raising  the awareness of nurses and parents is important.